Stem-loop mdm-MIR159a

Accession

MI0023002

Description

Malus domestica mdm-MIR159a precursor miRNA

Literature search

12 open access papers mention mdm-MIR159a
(72 sentences)

Sequence

1265668 reads, 85017.0 reads per million, 32 experiments

ggagcuccuuuugauucaaaagcaggagggagagaggguuuuacacUGCUGCUGGUUCAUGGAUGCCccugaggugcgcacgauaaggaaacugcgcagcuuaaggguuugcauggcccaggagaugugaauuccuucuccucuccuuuCUUGGAUUGAAGGGAGCUCC
(((((((((((((((((((.((.(((((((.(((((((..((.(((..((.((((.(((((.(.((((.((((.((((((............)))))).)))).)))).).))))).)))).))..)))))..)))))))))))))))).)))))))))))))))))))

Structure

                   a  c       a       uu  a   UG  G    U     G U    c    g      cgaua 
ggagcuccuuuugauucaa ag aggaggg gagaggg  uu cac  CU CUGG UCAUG A GCCc ugag ugcgca     a
||||||||||||||||||| || ||||||| |||||||  || |||  || |||| ||||| | |||| |||| ||||||      
CCUCGAGGGAAGUUAGGUU uu uccucuc cucuucc  aa gug  ga gacc gguac u uggg auuc acgcgu     g
                   C  -       -       uu  -   ua  g    c     g u    a    g      caaag 

Annotation confidence Low

Genome context

MDC026449.10: 321-489 [-]

Mature mdm-miR159a-5p

• Accession: MIMAT0056594
• Description: Malus domestica mdm-miR159a-5p mature miRNA
• Sequence: 47 - UGCUGCUGGUUCAUGGAUGCC - 67
• Evidence: experimental ; unknown

Mature mdm-miR159a-3p

• Accession: MIMAT0025898
• Description: Malus domestica mdm-miR159a-3p mature miRNA
• Sequence: 150 - CUUGGAUUGAAGGGAGCUCC - 169
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47