Stem-loop mdm-MIR156ab

Accession

MI0022998

Description

Malus domestica mdm-MIR156ab precursor miRNA

Literature search

14 open access papers mention mdm-MIR156ab
(294 sentences)

Sequence

329360 reads, 23043.0 reads per million, 32 experiments

aggaguggggaacugggagagagaaagagcagggagugaugauacauugUUGACAGAAGAUAGAGAGCACagauggaugacuugcaauugacuaugcaucucacuccuuuguGCUCUCUAUGCUUCUGUCAUCaccucguuauaucuagcuuccuugccucucuccacacccgugcaccu
(((.(((.((...((((((((((.....((((((((((((((.....((.(((((((((((((((((((((((.((((((..((((........))))..))).))))))))))))))))).))))))))).))..)))))))........))))))))))))))).)).)).))).)))

Structure

   a   g  aac  -        aaaga       --------       uacau  U         -              u   -   cu    auu 
agg gug gg   ug ggagagag     gcaggga        gugauga     ug UGACAGAAG AUAGAGAGCACaga gga uga  ugca   g
||| ||| ||   || ||||||||     |||||||        |||||||     || ||||||||| |||||||||||||| ||| |||  ||||    
ucc cgu cc   ac ccucucuc     cguuccu        uauugcu     aC ACUGUCUUC UAUCUCUCGuguuu ccu acu  acgu   a
   a   g  --c  a        -----       ucgaucua       ---cc  U         G              -   c   cu    auc 

Annotation confidence High

Genome context

MDC002621.233: 15612-15791 [+]

Mature mdm-miR156ab-5p

• Accession: MIMAT0025894
• Description: Malus domestica mdm-miR156ab-5p mature miRNA
• Sequence: 50 - UUGACAGAAGAUAGAGAGCAC - 70
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156ab-3p

• Accession: MIMAT0056592
• Description: Malus domestica mdm-miR156ab-3p mature miRNA
• Sequence: 113 - GCUCUCUAUGCUUCUGUCAUC - 133
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47