Stem-loop mdm-MIR156w

Accession

MI0022993

Description

Malus domestica mdm-MIR156w precursor miRNA

Literature search

14 open access papers mention mdm-MIR156w
(294 sentences)

Sequence

1428 reads, 92.0 reads per million, 31 experiments

ugUUGACAGAAGAGAGAGAGCACaacccrccaucggcuaaagagagucuuuuccguuguugggaguguGCUCUCUUUUCUUCUGUCAUCA
((.(((((((((((((((((((((.(((..((.(((..(((((...))))).))).))..)))..))))))))).)))))))))))).))

Structure

  U            -         -a   rc  u   cu     g 
ug UGACAGAAGAGA GAGAGCACa  ccc  ca cgg  aaaga  
|| |||||||||||| |||||||||  |||  || |||  ||||| a
AC ACUGUCUUCUUU CUCUCGugu  ggg  gu gcc  uuucu  
  U            U         ga   uu  u   -u     g 

Annotation confidence High

Genome context

MDC019519.284: 5665-5754 [+]

Mature mdm-miR156w-5p

• Accession: MIMAT0025889
• Description: Malus domestica mdm-miR156w-5p mature miRNA
• Sequence: 3 - UUGACAGAAGAGAGAGAGCAC - 23
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156w-3p

• Accession: MIMAT0056587
• Description: Malus domestica mdm-miR156w-3p mature miRNA
• Sequence: 69 - GCUCUCUUUUCUUCUGUCAUCA - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47