Stem-loop mdm-MIR156u

Accession

MI0022991

Description

Malus domestica mdm-MIR156u precursor miRNA

Literature search

14 open access papers mention mdm-MIR156u
(294 sentences)

Sequence

1542 reads, 105.0 reads per million, 31 experiments

augUUGACAGAAGAGAGAGAGCACaacccgccaucggcuaaggagagucuuuacguugcugggaguguGCUUUCUCUUCUUCUGUCAUCau
(((.(((((((((((((((((((((.(.(.(((.((((((((((...)))))).)))).)))).)))))))))))).)))))))))).)))

Structure

   U          -           a c g   u    -      g 
aug UGACAGAAGA GAGAGAGCACa c c cca cggc uaagga  
||| |||||||||| ||||||||||| | | ||| |||| |||||| a
uaC ACUGUCUUCU CUCUUUCGugu g g ggu guug auuucu  
   U          U           - a -   c    c      g 

Annotation confidence High

Genome context

MDC008280.307: 1-91 [+]

Mature mdm-miR156u-5p

• Accession: MIMAT0025887
• Description: Malus domestica mdm-miR156u-5p mature miRNA
• Sequence: 4 - UUGACAGAAGAGAGAGAGCAC - 24
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156u-3p

• Accession: MIMAT0056585
• Description: Malus domestica mdm-miR156u-3p mature miRNA
• Sequence: 69 - GCUUUCUCUUCUUCUGUCAUC - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47