Stem-loop mdm-MIR156s

Accession

MI0022989

Description

Malus domestica mdm-MIR156s precursor miRNA

Literature search

14 open access papers mention mdm-MIR156s
(294 sentences)

Sequence

304728 reads, 11056.0 reads per million, 31 experiments

ugCUGACAGAAGAUAGAGAGCACagaugaggaaaugcaagaacaaggcagcaucuccauccuuuguGCUCUCUAUUCUUCUGUCAACa
...(((((((((((((((((((((((.(((((.((((............)))).))).)).))))))))))))).))))))))))...

Structure

ugC          -             u  -   a    aagaa 
   UGACAGAAGA UAGAGAGCACaga ga gga augc     c
   |||||||||| ||||||||||||| || ||| ||||      
   ACUGUCUUCU AUCUCUCGuguuu cu ccu uacg     a
aCA          U             c  a   c    acgga 

Annotation confidence High

Genome context

Unknown

Mature mdm-miR156s-5p

• Accession: MIMAT0025885
• Description: Malus domestica mdm-miR156s-5p mature miRNA
• Sequence: 3 - CUGACAGAAGAUAGAGAGCAC - 23
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156s-3p

• Accession: MIMAT0056584
• Description: Malus domestica mdm-miR156s-3p mature miRNA
• Sequence: 67 - GCUCUCUAUUCUUCUGUCAAC - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47