Stem-loop mdm-MIR156n

Accession

MI0022984

Description

Malus domestica mdm-MIR156n precursor miRNA

Literature search

14 open access papers mention mdm-MIR156n
(294 sentences)

Sequence

69753 reads, 16104.0 reads per million, 32 experiments

uuaaucugguuggacuuaggguagaaauUGACAGAAGAGAGUGAGCACacagaggcacuugccauaaagcguaugccauugcuuuugcguGCUCAUGUCUCUUUCUGUCAGCUuccccauuuccacugccggauuaa
.(((((((((((((..(.(((..(((.(((((((((((((((((((((.((((((((..((.((((.....)))).)).)))))))).)))))))).)))).))))))))).)))))))..))))..))))))))).

Structure

u         --    cu a   ua   a         -    -        a        cu  c    a 
 uaaucuggu  ugga  u ggg  gaa uUGACAGAA GAGA GUGAGCAC cagaggca  ug caua a
 |||||||||  ||||  | |||  ||| ||||||||| |||| |||||||| ||||||||  || |||| g
 auuaggccg  accu  a ccc  cuU GACUGUCUU CUCU UACUCGug guuuucgu  ac guau c
a         uc    uu -   --   C         U    G        c        -u  c    g 

Annotation confidence High

Genome context

MDC022241.434: 30158-30294 [-]

Mature mdm-miR156n-5p

• Accession: MIMAT0025880
• Description: Malus domestica mdm-miR156n-5p mature miRNA
• Sequence: 29 - UGACAGAAGAGAGUGAGCAC - 48
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156n-3p

• Accession: MIMAT0056579
• Description: Malus domestica mdm-miR156n-3p mature miRNA
• Sequence: 91 - GCUCAUGUCUCUUUCUGUCAGCU - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47