Stem-loop mdm-MIR156j

Accession

MI0022980

Description

Malus domestica mdm-MIR156j precursor miRNA

Literature search

14 open access papers mention mdm-MIR156j
(294 sentences)

Sequence

64929 reads, 16133.0 reads per million, 32 experiments

guUGACAGAAGAGAGUGAGCACacacaggcagcaauuguauaaaaucauaccuuugggcggugcguGCUCACCUCUCUCUCUGUCAGC
((((((((((((((((((((((.(((..((..(((..((((......))))..))).)).))).))))))).)))))).)))))))))

Structure

         -      -       a   ag  ag   uu    aa 
guUGACAGA AGAGAG UGAGCAC cac  gc  caa  guau  a
||||||||| |||||| ||||||| |||  ||  |||  ||||   
CGACUGUCU UCUCUC ACUCGug gug  cg  guu  caua  a
         C      C       c   -g  -g   uc    cu 

Annotation confidence High

Genome context

MDC038184.5: 20018-20105 [-]

Mature mdm-miR156j-5p

• Accession: MIMAT0025876
• Description: Malus domestica mdm-miR156j-5p mature miRNA
• Sequence: 3 - UGACAGAAGAGAGUGAGCAC - 22
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156j-3p

• Accession: MIMAT0056575
• Description: Malus domestica mdm-miR156j-3p mature miRNA
• Sequence: 67 - GCUCACCUCUCUCUCUGUCAGC - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47