Stem-loop mdm-MIR156e

Accession

MI0022975

Description

Malus domestica mdm-MIR156e precursor miRNA

Literature search

14 open access papers mention mdm-MIR156e
(294 sentences)

Sequence

64859 reads, 16448.0 reads per million, 31 experiments

aguUGACAGAAGAGAGUGAGCACacacaggcggcaauuguauaaaaucauaccuuugggcggugcguGCUCACUUCUCUCUCCGUCAGCU
(((((((.(((((((((((((((.(((..((..(((..((((......))))..))).)).))).)))))))).))))).)).)))))))

Structure

       A  -     -        a   ag  gg   uu    aa 
aguUGAC GA AGAGA GUGAGCAC cac  gc  caa  guau  a
||||||| || ||||| |||||||| |||  ||  |||  ||||   
UCGACUG CU UCUCU CACUCGug gug  cg  guu  caua  a
       C  C     U        c   -g  -g   uc    cu 

Annotation confidence High

Genome context

MDC010428.318: 17260-17349 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR156e

Mature mdm-miR156e-5p

• Accession: MIMAT0025871
• Description: Malus domestica mdm-miR156e-5p mature miRNA
• Sequence: 4 - UGACAGAAGAGAGUGAGCAC - 23
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156e-3p

• Accession: MIMAT0056572
• Description: Malus domestica mdm-miR156e-3p mature miRNA
• Sequence: 68 - GCUCACUUCUCUCUCCGUCAGCU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47