Stem-loop mdm-MIR156c

Accession

MI0022973

Description

Malus domestica mdm-MIR156c precursor miRNA

Literature search

14 open access papers mention mdm-MIR156c
(295 sentences)

Sequence

65062 reads, 16139.0 reads per million, 32 experiments

guaguUGACAGAAGAGAGUGAGCACacacaggcagcaauuguauaaaaucauacccuugggcggugcguGCUCACCUCUCUCUCUGUCAGCUGc
(((((((((((((((((((((((((.(((..((..(((..((((......))))..))).)).))).))))))).)))))).))))))))))))

Structure

            -      -       a   ag  ag   uu    aa 
guaguUGACAGA AGAGAG UGAGCAC cac  gc  caa  guau  a
|||||||||||| |||||| ||||||| |||  ||  |||  ||||   
cGUCGACUGUCU UCUCUC ACUCGug gug  cg  guu  caua  a
            C      C       c   -g  -g   cc    cu 

Annotation confidence High

Genome context

MDC010428.308: 6929-7022 [+]

Mature mdm-miR156c-5p

• Accession: MIMAT0025869
• Description: Malus domestica mdm-miR156c-5p mature miRNA
• Sequence: 6 - UGACAGAAGAGAGUGAGCAC - 25
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156c-3p

• Accession: MIMAT0056570
• Description: Malus domestica mdm-miR156c-3p mature miRNA
• Sequence: 70 - GCUCACCUCUCUCUCUGUCAGCUG - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47