Stem-loop mmu-mir-6971

Accession

MI0022819

Symbol

MGI: Mir6971

Description

Mus musculus mmu-mir-6971 precursor miRNA

Literature search

2 open access papers mention mmu-mir-6971
(2 sentences)

Sequence

40 reads, 1 reads per million, 21 experiments

uggggUGGGGGAGGGUGUAGAGGCUgggcuggcagacucaucACAGCCUCUGCUUCUUCUCAG
........(((((((.((((((((((((.(((.....))))).)))))))))).)))))))..

Structure

uggggUGG       U          -  c   c 
        GGGAGGG GUAGAGGCUg gg ugg a
        ||||||| |||||||||| || ||| g
        CUCUUCU CGUCUCCGAC cu acu a
------GA       U          A  -   c 

Annotation confidence Not enough data

Genome context

chr17: 34841809-34841871 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-6971

Mature mmu-miR-6971-5p

• Accession: MIMAT0027844
• Description: Mus musculus mmu-miR-6971-5p mature miRNA
• Sequence: 6 - UGGGGGAGGGUGUAGAGGCU - 25
• Evidence: experimental ; meta-analysis [1]

Mature mmu-miR-6971-3p

• Accession: MIMAT0027845
• Description: Mus musculus mmu-miR-6971-3p mature miRNA
• Sequence: 43 - ACAGCCUCUGCUUCUUCUCAG - 63
• Evidence: experimental ; meta-analysis [1]

References

1. PubMed ID: 22955976
   Discovery of hundreds of mirtrons in mouse and human small RNA data
   "Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC"
   "Genome Res (2012) 22:1634-1645