Stem-loop ghr-MIR399e

Accession

MI0022547

Description

Gossypium hirsutum ghr-MIR399e precursor miRNA

Literature search

12 open access papers mention ghr-MIR399e
(33 sentences)

Sequence

aaaaaugcaugggugcauuacugggugaaucuccuuuggaaggcaacuaaaacucgguuacauugcauguuggcaugccauguggugggcgacaugcgaugcgaugcuuagcucacUGCCAAAGGAGAUUUGCCCCGcaauucagccaugcaacacg
.....(((((((.((.(((.(.(((((((((((((((((.((....((((...(((....((((((((((((.(..(((....))).).)))))))))))))))...))))....)).))))))))))))))))).).))).)).))))))).....

Structure

aaaaa       g  c   a u                 a  gcaa    aac   guua            g au   a 
     ugcaugg ug auu c gggugaaucuccuuugg ag    cuaa   ucg    cauugcauguug c  gcc u
     ||||||| || ||| | ||||||||||||||||| ||    ||||   |||    |||||||||||| |  |||  
     acguacc ac uaa G CCCGUUUAGAGGAAACC Uc    gauu   agc    guagcguacagc g  ugg g
gcaca       g  u   c C                 G  acuc    cgu   ----            g -g   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR399e

• Accession: MIMAT0025840
• Description: Gossypium hirsutum ghr-miR399e mature miRNA
• Sequence: 117 - UGCCAAAGGAGAUUUGCCCCG - 137
• Evidence: experimental ; microarray [1]

References

1. PubMed ID: 22160515
   Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity
   "Yin Z, Li Y, Yu J, Liu Y, Li C, Han X, Shen F"
   "Mol Biol Rep (2012) 39:4961-4970