Stem-loop gga-mir-6599

Accession

MI0022544

Description

Gallus gallus gga-mir-6599 precursor miRNA

Literature search

1 open access papers mention gga-mir-6599
(1 sentences)

Sequence

12 reads, 0 reads per million, 2 experiments

cagaggcggugcugggagcgAAGGGAGGCUCCGGUCCGCUCUGAgggcacacgaugUGACGGAUCCUGGCUCCCUCCGcuccucccggcgcacaccu
...(((.(((((((((((((.((((((.(...(((((((.(...(......)...).).))))))..).)))))).)))...))))))))).).)))

Structure

cag   c -         ---   A      G UCC      - U UGA gg 
   agg g gugcuggga   gcg AGGGAG C   GGUCCG C C   g  c
   ||| | |||||||||   ||| |||||| |   |||||| | |   |   
   ucc c cgcggcccu   cGC UCCCUC G   CUAGGC G g   c  a
---   a a         ccu   C      G -UC      A U uag ac 

Annotation confidence Low

Genome context

chr18: 5100494-5100590 [-]

Mature gga-miR-6599-5p

• Accession: MIMAT0025836
• Description: Gallus gallus gga-miR-6599-5p mature miRNA
• Sequence: 21 - AAGGGAGGCUCCGGUCCGCUCUGA - 44
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6599-3p

• Accession: MIMAT0025837
• Description: Gallus gallus gga-miR-6599-3p mature miRNA
• Sequence: 57 - UGACGGAUCCUGGCUCCCUCCG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227