Stem-loop gga-mir-6557

Accession

MI0022540

Description

Gallus gallus gga-mir-6557 precursor miRNA

Literature search

1 open access papers mention gga-mir-6557
(1 sentences)

Sequence

6 reads, 0 reads per million, 4 experiments

cguuacgccccgcgccgugcCCGGAGGAGCCCGGCGCUGCcuuucuacgcggccgcCGCGCCGAUUGUCUCCUCCGGGCACgggggaugucggcgggcccgcugcg
....(((.(((...((((((((((((((((.((((((.(((.........)))....))))))...).)))))))))))))))))).)))(((((....)))))..

Structure

------------cguu   c   gcg               - --C      ---U   uuu 
                acg ccc   ccgugcCCGGAGGAG C   CGGCGC    GCc   c
                ||| |||   ||||||||||||||| |   ||||||    |||   u
                ugu ggg   ggCACGGGCCUCCUC G   GCCGCG    cgg   a
gcgucgcccgggcggc   a   ---               U UUA      Ccgc   cgc 

Annotation confidence Low

Genome context

Unknown

Mature gga-miR-6557-5p

• Accession: MIMAT0025828
• Description: Gallus gallus gga-miR-6557-5p mature miRNA
• Sequence: 21 - CCGGAGGAGCCCGGCGCUGC - 40
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6557-3p

• Accession: MIMAT0025829
• Description: Gallus gallus gga-miR-6557-3p mature miRNA
• Sequence: 57 - CGCGCCGAUUGUCUCCUCCGGGCAC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227