Stem-loop gga-mir-6516

Accession

MI0022520

Description

Gallus gallus gga-mir-6516 precursor miRNA

Literature search

1 open access papers mention gga-mir-6516
(1 sentences)

Sequence

106 reads, 1 reads per million, 5 experiments

agaggucccccugcuggguuccuccuAUGCAGUAACAGGUGUGAGCAUccaugcagcauucugaugguCAUGUAUGAUACUGCACACAACGaguugcugucuucagccaa
.((((..(((.....)))..))))...(((((((.((..(((((.((((.(((...)))...)))).)))))..)).)))))))...........((((....))))...

Structure

agaggucccccugcuggguuccuccuA       A  GG     G    --c   c 
                           UGCAGUA CA  UGUGA CAUc   aug  
                           ||||||| ||  ||||| ||||   ||| a
                           ACGUCAU GU  GUACu guag   uac  
-aaccgacuucugucguugaGCAACAC       A  AU     g    ucu   g 

Annotation confidence Medium

Genome context

chr18: 4170788-4170897 [-]

Mature gga-miR-6516-5p

• Accession: MIMAT0025806
• Description: Gallus gallus gga-miR-6516-5p mature miRNA
• Sequence: 27 - AUGCAGUAACAGGUGUGAGCAU - 48
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6516-3p

• Accession: MIMAT0025807
• Description: Gallus gallus gga-miR-6516-3p mature miRNA
• Sequence: 69 - CAUGUAUGAUACUGCACACAACG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227