Stem-loop gga-mir-6688

Accession

MI0022509

Description

Gallus gallus gga-mir-6688 precursor miRNA

Sequence

gucacaccauaaacugccugauugccaagucuuuuuccucugguggcucaggcaucguagccUGAGUCACCUGAGGAGGCUUUUuccuuuuauuaugcacuaugaagucc
.......((((...(((.((((....(((((....(((((.((((((((((((......)))))))))))).)))))))))).........)))).))).))))......

Structure

gucacac    aac   c    -----ugcc     uuuu     u            au 
       caua   ugc ugau         aaguc    uccuc gguggcucaggc  c
       ||||   ||| ||||         |||||    ||||| ||||||||||||   
       guau   acg auua         UUCGG    AGGAG CCACUGAGUccg  g
-ccugaa    --c   u    uuuuccuUU     ----     U            au 

Annotation confidence Low

Genome context

chr4: 21966872-21966981 [+]

Mature gga-miR-6688-3p

• Accession: MIMAT0025794
• Description: Gallus gallus gga-miR-6688-3p mature miRNA
• Sequence: 63 - UGAGUCACCUGAGGAGGCUUUU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227