Stem-loop gga-mir-6680

Accession

MI0022500

Description

Gallus gallus gga-mir-6680 precursor miRNA

Sequence

2 reads, 2 reads per million, 1 experiments

ccaagguauguaugguauguaucauugguguacuuggugagggugggcccugcccucauugagGUUGCUGAUGAAGAUACUGAAUgaacuuggacccagcacugccagca
(((((...(((.((((((.(.(((((((((..((((((((((((((...))))))))))))))..)))))))))).)))))).)))..))))).....((.......)).

Structure

-----------------     gua   a      g a         ua              g 
                 ccaag   ugu ugguau u ucauuggug  cuuggugagggugg  
                 |||||   ||| |||||| | |||||||||  |||||||||||||| c
                 gguuc   gUA GUCAUA A AGUAGUCGU  gaguuacucccguc  
acgaccgucacgaccca     -aa   A      G -         UG              c 

Annotation confidence Low

Genome context

chr21: 2632687-2632796 [+]

Mature gga-miR-6680-3p

• Accession: MIMAT0025784
• Description: Gallus gallus gga-miR-6680-3p mature miRNA
• Sequence: 64 - GUUGCUGAUGAAGAUACUGAAU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227