Stem-loop gga-mir-6658

Accession

MI0022478

Description

Gallus gallus gga-mir-6658 precursor miRNA

Sequence

1 reads, 1 reads per million, 1 experiments

cagcccugcucguagcuccaccgcucugcuccagccccugcccagagccucauaaauagacuguggCAUGGACGGGGGAAGGAGAUAGCgagagggggugucagcaucug
(((...((((.(..(((((.(((((.(.((((..((((((.(((..(((.((.........)).))).))).))))))..))))).)))).)..)))))..))))).)))

Structure

   ccc    c ua     -a -    c g    ag      c   ga   u  uaa 
cag   ugcu g  gcucc  c cgcu u cucc  ccccug cca  gcc ca   a
|||   |||| |  |||||  | |||| | ||||  |||||| |||  ||| ||   u
guc   acga c  ugggg  g gCGA A GAGG  GGGGGC GGU  Cgg gu   a
   --u    - ug     ga a    U -    AA      A   -A   u  cag 

Annotation confidence Low

Genome context

chr4: 1209300-1209409 [-]

Mature gga-miR-6658-3p

• Accession: MIMAT0025759
• Description: Gallus gallus gga-miR-6658-3p mature miRNA
• Sequence: 67 - CAUGGACGGGGGAAGGAGAUAGC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227