Stem-loop gga-mir-6652

Accession

MI0022471

Description

Gallus gallus gga-mir-6652 precursor miRNA

Sequence

cucuccaugcccugccugcUGGGUGUAUGUGGGACAGCUCagugcccccacagagggggagagcagccccacaacccccacugggcagcgugacccagccaccagcaaca
.....(((((..((((((.((((.((.((((((.(.((((....(((((.....))))).)))).).)))))))).)))).))))))))))).....((.....))....

Structure

-------------cucuc     cc      c    U  A      A A    agug     a 
                  caugc  ugccug UGGG GU UGUGGG C GCUC    ccccc c
                  |||||  |||||| |||| || |||||| | ||||    ||||| a
                  gugcg  acgggu accc ca acaccc g cgag    ggggg g
acaacgaccaccgaccca     --      c    c  -      c a    ---a     a 

Annotation confidence Low

Genome context

chr13: 8923374-8923483 [+]

Mature gga-miR-6652-5p

• Accession: MIMAT0025752
• Description: Gallus gallus gga-miR-6652-5p mature miRNA
• Sequence: 20 - UGGGUGUAUGUGGGACAGCUC - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227