Stem-loop gga-mir-6649

Accession

MI0022468

Description

Gallus gallus gga-mir-6649 precursor miRNA

Sequence

156 reads, 2 reads per million, 5 experiments

ugagcuguucuccggggauggugacacugugucugaagccuugcagcagcucuuggUUUAUCACAUCAAUGCCAAGCAGguaugacagggaaauacuUGCUGGCAGUGCUGUGGUAGUGccagggguuaguuguguggu
.(((.....)))((((.(((((...))))).))))..(((..(((((((((((((((((((((((.((.(((((.((((((((.........))))))))))))).)).)))))))).)))))))))).)))))..)))

Structure

ugagcuguucuccggggauggugacacugugucugaa   uu     -          -        U  A     A        gac 
                                     gcc  gcagc agcucuuggU UUAUCACA CA UGCCA GCAGguau   a
                                     |||  ||||| |||||||||| |||||||| || ||||| ||||||||   g
                                     ugg  uguug uuggggaccG GAUGGUGU GU ACGGU CGUucaua   g
-------------------------------------   ug     a          U        C  G     -        aag 

Annotation confidence Medium

Genome context

chrZ: 8585318-8585456 [-]

Mature gga-miR-6649-5p

• Accession: MIMAT0025748
• Description: Gallus gallus gga-miR-6649-5p mature miRNA
• Sequence: 57 - UUUAUCACAUCAAUGCCAAGCAG - 79
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6649-3p

• Accession: MIMAT0025749
• Description: Gallus gallus gga-miR-6649-3p mature miRNA
• Sequence: 98 - UGCUGGCAGUGCUGUGGUAGUG - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227