Stem-loop gga-mir-6643

Accession

MI0022462

Description

Gallus gallus gga-mir-6643 precursor miRNA

Sequence

6 reads, 0 reads per million, 4 experiments

aggaaccuggucccaggaaccccagccCCAGGGCUGGCAGGGGAGGGUauacgcaggcagccaccccugccagccuugggacggugguuucccagaagccccagagcaag
.((...((((.....((((((((.(.(((((((((((((((((..(((...........))).))))))))))))))))).))).))))))))))...))..........

Structure

---------a  aac    uccca      -  a c                 AG   auac 
          gg   cugg     ggaacc cc g cCCAGGGCUGGCAGGGG  GGU    g
          ||   ||||     |||||| || | |||||||||||||||||  |||    c
          cc   gacc     cuuugg gg c ggguuccgaccgucccc  ccg    a
gaacgagacc  gaa    -----      u  - a                 -a   acgg 

Annotation confidence Not enough data

Genome context

chr14: 13204038-13204147 [-]

Mature gga-miR-6643-5p

• Accession: MIMAT0025741
• Description: Gallus gallus gga-miR-6643-5p mature miRNA
• Sequence: 28 - CCAGGGCUGGCAGGGGAGGGU - 48
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227