Stem-loop gga-mir-6642

Accession

MI0022461

Description

Gallus gallus gga-mir-6642 precursor miRNA

Sequence

acacgacgccgccgccgcgUUCCCCGACGGCCGAGCGGGCCgcuccgcggggCGGGCGGCCGUCGGGGAAAGCGGaggcgguagcggcuauuccuccgccu
.......((((((.((((.((((((((((((((..((..((((...))))..))..)))))))))))))).)))).)))))).((((........))))..

Structure

------------acacgac      g    g              AG  GG    u 
                   gccgcc ccgc UUCCCCGACGGCCG  CG  CCgc  
                   |||||| |||| ||||||||||||||  ||  |||| c
                   uggcgg GGCG AAGGGGCUGCCGGC  GC  ggcg  
uccgccuccuuaucggcga      a    A              GG  gg    c 

Annotation confidence Low

Genome context

Unknown

Mature gga-miR-6642-5p

• Accession: MIMAT0025739
• Description: Gallus gallus gga-miR-6642-5p mature miRNA
• Sequence: 20 - UUCCCCGACGGCCGAGCGGGCC - 41
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6642-3p

• Accession: MIMAT0025740
• Description: Gallus gallus gga-miR-6642-3p mature miRNA
• Sequence: 53 - CGGGCGGCCGUCGGGGAAAGCGG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227