Stem-loop gga-mir-6640

Accession

MI0022459

Description

Gallus gallus gga-mir-6640 precursor miRNA

Sequence

1 reads, 0 reads per million, 1 experiments

aauguugguaauuauuuuaUCUGGAAUUGUAGUAGAGUGUAUuauuauggcaugugccuaauggcucuacugcuuucuugucaggugauaugaaggacgacacgacggac
..(((((....((((.((((((((....((((((((((....(((((.(((....)))))))))))))))))).......)))))))).))))....)))))........

Structure

------aa     guaa    u        ---AAUU          GUAU     u   a 
        uguug    uuau uuaUCUGG       GUAGUAGAGU    uauua ggc u
        |||||    |||| ||||||||       ||||||||||    ||||| |||  
        acagc    agua aguggacu       cgucaucucg    guaau ccg g
caggcagc     agga    u        guucuuu          ----     -   u 

Annotation confidence Low

Genome context

chr3: 22223149-22223258 [+]

Mature gga-miR-6640-5p

• Accession: MIMAT0025736
• Description: Gallus gallus gga-miR-6640-5p mature miRNA
• Sequence: 20 - UCUGGAAUUGUAGUAGAGUGUAU - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227