Stem-loop gga-mir-6629

Accession

MI0022448

Description

Gallus gallus gga-mir-6629 precursor miRNA

Sequence

12 reads, 0 reads per million, 3 experiments

aucuguggugccagaacagagCUGGGAACUUGAGGCAGCUGUUGAGUgcuaaggaggcuccagcugaucccuguuccucgccucauucugcagcaagguuucaguuggug
((((.((.(((.((((.((.((.((((((..(.((((((((..((((.........)))))))))).)))..)))))).))))..))))))).))))))...........

Structure

-----------    g  g   c    -c  a  U      UU A  -      UU    gcu 
           aucu ug ugc agaa  ag gC GGGAAC  G GG CAGCUG  GAGU   a
           |||| || ||| ||||  || || ||||||  | || ||||||  ||||   a
           ugga ac acg ucuu  uc cg uccuug  c cu gucgac  cucg   g
gugguugacuu    -  g   -    ac  -  c      uc -  a      --    gag 

Annotation confidence Low

Genome context

chr1: 917736-917845 [+]

Mature gga-miR-6629-5p

• Accession: MIMAT0025725
• Description: Gallus gallus gga-miR-6629-5p mature miRNA
• Sequence: 22 - CUGGGAACUUGAGGCAGCUGUUGAGU - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227