Stem-loop gga-mir-6616

Accession

MI0022435

Description

Gallus gallus gga-mir-6616 precursor miRNA

Literature search

1 open access papers mention gga-mir-6616
(1 sentences)

Sequence

guucugcuggcggggaaggaGCUCUGUGAUGGCUAGCUGAGAugggggauucagccaucuucugguggcucgugcuugucagacauugcagggcugguucagagcuucaa
.((((.(....).))))(((((((((....((((((((..((((...(((..(((((((....))))))).......)))...))))....)))))))))))))))))..

Structure

guucugcuggcggggaa         UGAU        --GA    ggg   -----uc       u 
                 ggaGCUCUG    GGCUAGCU    GAug   gau       agccauc u
                 |||||||||    ||||||||    ||||   |||       |||||||  
                 cuucgagac    uuggucgg    uuac   cug       ucggugg c
---------------aa         ----        gacg    aga   uucgugc       u 

Annotation confidence Low

Genome context

chr1: 92351545-92351654 [+]

Mature gga-miR-6616-5p

• Accession: MIMAT0025712
• Description: Gallus gallus gga-miR-6616-5p mature miRNA
• Sequence: 21 - GCUCUGUGAUGGCUAGCUGAGA - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227