Stem-loop gga-mir-6602

Accession

MI0022421

Description

Gallus gallus gga-mir-6602 precursor miRNA

Sequence

7 reads, 0 reads per million, 3 experiments

cgggcugcagugcuacuccgugaggACAGGGAUUGCAGAGGUUGGAGcuguggcugacguggcucuuuucugccucccucccagguucucauucugcuguacauugcuga
......((((((.(((..((((((((((((((..(((((((..(((((((((.....)))))))))))))))).))))).....))))))))...)..)))))))))...

Structure

cgggcu      c   uc ---        -----     UU       UU         g 
      gcagug uac  c   gugaggAC     AGGGA  GCAGAGG  GGAGcugug c
      |||||| |||  |   ||||||||     |||||  |||||||  ||||||||| u
      cguuac aug  g   uacucuug     ucccu  cgucuuu  ucucggugc g
---agu      -   uc ucu        gaccc     -c       --         a 

Annotation confidence Low

Genome context

chr26: 2287351-2287460 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-6602

Mature gga-miR-6602-5p

• Accession: MIMAT0025696
• Description: Gallus gallus gga-miR-6602-5p mature miRNA
• Sequence: 26 - ACAGGGAUUGCAGAGGUUGGAG - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227