Stem-loop gga-mir-6582

Accession

MI0022401

Description

Gallus gallus gga-mir-6582 precursor miRNA

Sequence

274 reads, 3 reads per million, 5 experiments

ucaguguuguugcauccugUUAGAGAGACACUCAUAGAGagucuuuucacaguaacuCACUCUGGGUGUUUCUCUUGCAGaaaacugagguaauagaagaagcuu
(((((....(((((.......(((((((((((((.((.((((............)))).)).))))))))))))))))))...))))).................

Structure

-----------------     guug     uccugUU             U  A    cuuuu 
                 ucagu    uugca       AGAGAGACACUCA AG Gagu     c
                 |||||    |||||       ||||||||||||| || ||||      
                 aguca    GACGU       UCUCUUUGUGGGU UC Cuca     a
uucgaagaagauaaugg     -aaa     -------             C  A    augac 

Annotation confidence Low

Genome context

chr3: 57474216-57474320 [+]

Mature gga-miR-6582-5p

• Accession: MIMAT0025671
• Description: Gallus gallus gga-miR-6582-5p mature miRNA
• Sequence: 20 - UUAGAGAGACACUCAUAGAG - 39
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6582-3p

• Accession: MIMAT0025672
• Description: Gallus gallus gga-miR-6582-3p mature miRNA
• Sequence: 58 - CACUCUGGGUGUUUCUCUUGCAG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227