Stem-loop gga-mir-6580

Accession

MI0022399

Description

Gallus gallus gga-mir-6580 precursor miRNA

Sequence

agacuuuuucugcuuuguuacacagAGAAUUGACUUCAGUGCUGACUggaaaaucauaacaGUGCAUAUUGGAGGCAAUGAUCUaugcaacuauugcaaagaccc
..........(((...(((.((.(((..((((.((((((((.((((((...........)))).)))))))))).))))..))).)).)))....))).......

Structure

agacuuuuuc   -uuu   a  c   GA    A        C  -    gaaa 
          ugc    guu ca agA  AUUG CUUCAGUG UG ACUg    a
          |||    ||| || |||  |||| |||||||| || ||||    u
          acg    caa gu UCU  UAAC GAGGUUAU AC UGac    c
---cccagaa   uuau   c  a   AG    G        -  G    aaua 

Annotation confidence Low

Genome context

chr3: 27382792-27382896 [-]

Mature gga-miR-6580-5p

• Accession: MIMAT0025667
• Description: Gallus gallus gga-miR-6580-5p mature miRNA
• Sequence: 26 - AGAAUUGACUUCAGUGCUGACU - 47
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6580-3p

• Accession: MIMAT0025668
• Description: Gallus gallus gga-miR-6580-3p mature miRNA
• Sequence: 62 - GUGCAUAUUGGAGGCAAUGAUCU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227