Stem-loop gga-mir-6579-1

Accession

MI0022397

Description

Gallus gallus gga-mir-6579-1 precursor miRNA

Sequence

gaggugagcgccgugcaacgccgugCAACGCCGUGCAACGCACCUGcgcggaaccAGAGGCAUUUCACAGCGUAACAcggcgugccuguuuacacugcguuccucagcgccuca
(((((((((((.(((..((((((((..((((.(((.((.((..(((........)))..)).)).))).))))..)))))))).........))).))))))......))))).

Structure

-     ------      c   -------ca        CA    C   C  C  AC   cgc 
 gaggu      gagcgc gug         acgccgug  ACGC GUG AA GC  CUG   g
 |||||      |||||| |||         ||||||||  |||| ||| || ||  |||    
 cuccg      cuugcg cac         ugcggcAC  UGCG CAC UU CG  GAc   g
a     cgacuc      u   auuuguccg        AA    A   U  A  GA   caa 

Annotation confidence Low

Genome context

chr5: 500362-500475 [-]

Mature gga-miR-6579-5p

• Accession: MIMAT0025665
• Description: Gallus gallus gga-miR-6579-5p mature miRNA
• Sequence: 26 - CAACGCCGUGCAACGCACCUG - 46
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6579-3p

• Accession: MIMAT0025666
• Description: Gallus gallus gga-miR-6579-3p mature miRNA
• Sequence: 56 - AGAGGCAUUUCACAGCGUAACA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227