Stem-loop gga-mir-6561

Accession

MI0022379

Description

Gallus gallus gga-mir-6561 precursor miRNA

Literature search

1 open access papers mention gga-mir-6561
(3 sentences)

Sequence

1 reads, 1 reads per million, 1 experiments

uuguggcccucugcuggacUCUUUCCAGGCAGGAGCUCCCUgccuuuuuuuugcaucaGGGAGCCCAGAACUGGAAACAGuagcccaggugaggccugaccaaua
....((((.((..(((((((.(((((((...((.((((((((.(........)...))))))))))....))))))).)))...))))..)))))).........

Structure

-----uugu    c  ug    ---   C       -GCA  A        --c uuu 
         ggcc uc  cugg   acU UUUCCAG    GG GCUCCCUg   c   u
         |||| ||  ||||   ||| |||||||    || ||||||||   |    
         ccgg ag  gacc   uGA AAAGGUC    CC CGAGGGac   g   u
auaaccagu    -  ug    cga   C       AAGA  -        uac uuu 

Annotation confidence Low

Genome context

chr8: 11216322-11216426 [+]

Mature gga-miR-6561-5p

• Accession: MIMAT0025629
• Description: Gallus gallus gga-miR-6561-5p mature miRNA
• Sequence: 20 - UCUUUCCAGGCAGGAGCUCCCU - 41
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6561-3p

• Accession: MIMAT0025630
• Description: Gallus gallus gga-miR-6561-3p mature miRNA
• Sequence: 59 - GGGAGCCCAGAACUGGAAACAG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227