Stem-loop gga-mir-6559

Accession

MI0022377

Description

Gallus gallus gga-mir-6559 precursor miRNA

Sequence

61 reads, 2 reads per million, 3 experiments

aaugugccuuaggaaagggaauggguUGGGAGAAAGAGUCAUUACCUGAcuucuuguuaucgggcuucAGAGUUGACUCUUCCUUGCAGUucuuggcgagcagaacuua
....(.((((....)))).).......(.(((.((((((((..((((((...((((....))))..)))).)))))))))).))).)((((((.(.....)))))))..

Structure

aaugugccuuaggaaagggaauggguU G   A        UU  -    cuu    u 
                           G GAG AAGAGUCA  AC CUGA   cuug u
                           | ||| ||||||||  || ||||   ||||  
                           C UUC UUCUCAGU  UG GAcu   gggc a
-----auucaagacgagcgguucuUGA G   C        --  A    -uc    u 

Annotation confidence Low

Genome context

chr1: 133113085-133113193 [-]

Mature gga-miR-6559-5p

• Accession: MIMAT0025625
• Description: Gallus gallus gga-miR-6559-5p mature miRNA
• Sequence: 27 - UGGGAGAAAGAGUCAUUACCUGA - 49
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6559-3p

• Accession: MIMAT0025626
• Description: Gallus gallus gga-miR-6559-3p mature miRNA
• Sequence: 69 - AGAGUUGACUCUUCCUUGCAGU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227