Stem-loop gga-mir-6558

Accession

MI0022376

Description

Gallus gallus gga-mir-6558 precursor miRNA

Sequence

cagguguggcaucgcgcugaaauacuguggacacugucgaccAAGUGAAACGUUGAGGUGGCUUGUugaucaaauAGGCCUUCUUGCGUAGCACUUGAauugucagaaaguaagugacuauc
..((((((....))))))........((.(((...))).))((((((..((((.((((.((((((((.....)))))))).))))))))..))))))....((((.........))))....

Structure

cagguguggcaucgcgcugaaauacuguggacacugucgac      AA    U    U        g 
                                         cAAGUG  ACGU GAGG GGCUUGUu a
                                         ||||||  |||| |||| |||||||| u
                                         GUUCAC  UGCG UUCU CCGGAuaa c
----------------cuaucagugaaugaaagacuguuaA      GA    -    U        a 

Annotation confidence Low

Genome context

chr9: 15205927-15206048 [+]

Mature gga-miR-6558-5p

• Accession: MIMAT0025623
• Description: Gallus gallus gga-miR-6558-5p mature miRNA
• Sequence: 43 - AAGUGAAACGUUGAGGUGGCUUGU - 66
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6558-3p

• Accession: MIMAT0025624
• Description: Gallus gallus gga-miR-6558-3p mature miRNA
• Sequence: 76 - AGGCCUUCUUGCGUAGCACUUGA - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227