Stem-loop gga-mir-6555

Accession

MI0022374

Description

Gallus gallus gga-mir-6555 precursor miRNA

Sequence

539 reads, 6 reads per million, 5 experiments

uucuaggagaucccugucuuuucuGAUCUGCAGAGCCCACAACUAGagacaguauucuaAAUGUGGCCUCAACAGAGCAGaguugauggggaagaucacc
......((..((((((((..(((((.((((..(((.(((((..((((........))))..))))).)))..)))).)))))..))))))))...))...

Structure

uucuag  -ga        uu     A    CA   C     AC    gac 
      ga   ucccuguc  uucuG UCUG  GAG CCACA  UAGa   a
      ||   ||||||||  ||||| ||||  ||| |||||  ||||    
      cu   agggguag  gaGAC AGAC  CUC GGUGU  aucu   g
---cca  aga        uu     G    AA   C     AA    uau 

Annotation confidence Medium

Genome context

chr1: 167040277-167040376 [-]

Mature gga-miR-6555-5p

• Accession: MIMAT0025619
• Description: Gallus gallus gga-miR-6555-5p mature miRNA
• Sequence: 25 - GAUCUGCAGAGCCCACAACUAG - 46
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6555-3p

• Accession: MIMAT0025620
• Description: Gallus gallus gga-miR-6555-3p mature miRNA
• Sequence: 60 - AAUGUGGCCUCAACAGAGCAG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227