Stem-loop gga-mir-6554

Accession

MI0022372

Description

Gallus gallus gga-mir-6554 precursor miRNA

Sequence

uagcuguuaauccuuugagUGUUUUUACAUUACACAGCAUAuguccagugaaaguucUGCUGUGUGGUUUAAGGAUACUcacugauucuccagcaacugcaaacag
..((((..((((...((((((((((((.(((((((((((.((.((....))..))..))))))))))).))))))))))))..))))...))))..(((....)))

Structure

----------ua    -uu    cuu            C           -U  -g  c 
            gcug   aauc   ugagUGUUUUUA AUUACACAGCA  Au  uc a
            ||||   ||||   |||||||||||| |||||||||||  ||  ||  
            cgac   uuag   acUCAUAGGAAU UGGUGUGUCGU  ug  ag g
gacaaacgucaa    cuc    -uc            U           cu  aa  u 

Annotation confidence Low

Genome context

chr2: 6787494-6787599 [+]

Mature gga-miR-6554-5p

• Accession: MIMAT0025615
• Description: Gallus gallus gga-miR-6554-5p mature miRNA
• Sequence: 20 - UGUUUUUACAUUACACAGCAUA - 41
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6554-3p

• Accession: MIMAT0025616
• Description: Gallus gallus gga-miR-6554-3p mature miRNA
• Sequence: 58 - UGCUGUGUGGUUUAAGGAUACU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227