Stem-loop gga-mir-6552

Accession

MI0022370

Description

Gallus gallus gga-mir-6552 precursor miRNA

Sequence

321 reads, 5 reads per million, 4 experiments

cucucugcccaacucuccaGUCUGUCCAGGUCUUGUUGGAuggcagcacagccuuuCAACAAGAAGUGGACAGACUGgagcguugcuucaagacugacaagaaa
...(((...((((.((((((((((((((..((((((((((.(((......))).))))))))))..)))))))))))))).)))).....)))...........

Structure

--------cuc   --gcc    u              GG          u   ag 
           ucu     caac cuccaGUCUGUCCA  UCUUGUUGGA ggc  c
           |||     |||| ||||||||||||||  |||||||||| |||   
           aga     guug gagGUCAGACAGGU  AGAACAACuu ccg  a
aaagaacaguc   acuuc    c              GA          u   ac 

Annotation confidence Medium

Genome context

chr5: 45270643-45270746 [+]

Mature gga-miR-6552-5p

• Accession: MIMAT0025611
• Description: Gallus gallus gga-miR-6552-5p mature miRNA
• Sequence: 20 - GUCUGUCCAGGUCUUGUUGGA - 40
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6552-3p

• Accession: MIMAT0025612
• Description: Gallus gallus gga-miR-6552-3p mature miRNA
• Sequence: 57 - CAACAAGAAGUGGACAGACUG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227