Stem-loop gga-mir-6550

Accession

MI0022367

Description

Gallus gallus gga-mir-6550 precursor miRNA

Sequence

48 reads, 1 reads per million, 4 experiments

gcuugcagguaggagcuucAAAGCAGCCCAGGAAGCGCUgcugcaaaacgugGCUCCACCCUCGGCUGCUUUGAaguucccacuuccagcacuucuuccu
(((.(.((((.(((((((((((((((((.(((..(.(((((........))))).)...))).))))))))))))))))).))))).)))..........

Structure

----------   u c    a                 C   -AA C     ugc 
          gcu g aggu ggagcuucAAAGCAGCC AGG   G GCUgc   a
          ||| | |||| ||||||||||||||||| |||   | |||||    
          cga c uuca ccuugaAGUUUCGUCGG UCC   C CGgug   a
uccuucuuca   c -    c                 C   CAC U     caa 

Annotation confidence Low

Genome context

chr10: 19176435-19176534 [+]

Mature gga-miR-6550-5p

• Accession: MIMAT0025605
• Description: Gallus gallus gga-miR-6550-5p mature miRNA
• Sequence: 20 - AAAGCAGCCCAGGAAGCGCU - 39
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6550-3p

• Accession: MIMAT0025606
• Description: Gallus gallus gga-miR-6550-3p mature miRNA
• Sequence: 53 - GCUCCACCCUCGGCUGCUUUGA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227