Stem-loop gga-mir-6549

Accession

MI0022366

Description

Gallus gallus gga-mir-6549 precursor miRNA

Literature search

1 open access papers mention gga-mir-6549
(1 sentences)

Sequence

25 reads, 0 reads per million, 4 experiments

cucuuggaugguggccuugAGCCUUCUGUUGUGCAUCUGAGAuuccagacagcuuuugucagaucACAGCUGUAAGCAGAAGGCACCCaaggcugccuuccuaugcaccagug
.....(((.((((((((((.((((((((((.((((.(((.((((...((((.....)))).)))).))).))))))))))))))...)))))))))).)))............

Structure

-------cucuu   u          --A          G    U   A    cca    g 
            gga gguggccuug   GCCUUCUGUU UGCA CUG GAuu   gaca c
            ||| ||||||||||   |||||||||| |||| ||| ||||   |||| u
            ccu ccgucggaaC   CGGAAGACGA AUGU GAC cuag   cugu u
gugaccacguau   u          CCA          -    C   A    --a    u 

Annotation confidence Low

Genome context

chr8: 24565307-24565419 [+]

Mature gga-miR-6549-5p

• Accession: MIMAT0025603
• Description: Gallus gallus gga-miR-6549-5p mature miRNA
• Sequence: 20 - AGCCUUCUGUUGUGCAUCUGAGA - 42
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6549-3p

• Accession: MIMAT0025604
• Description: Gallus gallus gga-miR-6549-3p mature miRNA
• Sequence: 66 - ACAGCUGUAAGCAGAAGGCACCC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227