Stem-loop gga-mir-6547

Accession

MI0022363

Description

Gallus gallus gga-mir-6547 precursor miRNA

Sequence

2 reads, 0 reads per million, 1 experiments

cgaguaccacgccgacgggggcaagGUGGGAUGUGGGGACGGGGUGAcggggagcgcgguguccccauagggucccacucACCCCUCCAUCCACCCACUCAgguccccaucaaguggaug
......((((...((.((((((..((((((.((.(((((.(((((((..((((.(.(.(((....))).)).))))..)))))))))).))))))))).)..)))))).))..))))...

Structure

cgagua    gcc  c      aa -     A  U  -   C       cg    g g g   u 
      ccac   ga gggggc  g GUGGG UG GG GGA GGGGUGA  ggga c c gug c
      ||||   || ||||||  | ||||| || || ||| |||||||  |||| | | |||  
      ggug   cu ccccug  C CACCC AC CU CCU CCCCAcu  cccu g g uac c
---gua    -aa  a      gA U     -  -  A   -       ca    g - a   c 

Annotation confidence Low

Genome context

chr27: 4660683-4660802 [+]

Mature gga-miR-6547-5p

• Accession: MIMAT0025597
• Description: Gallus gallus gga-miR-6547-5p mature miRNA
• Sequence: 26 - GUGGGAUGUGGGGACGGGGUGA - 47
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6547-3p

• Accession: MIMAT0025598
• Description: Gallus gallus gga-miR-6547-3p mature miRNA
• Sequence: 81 - ACCCCUCCAUCCACCCACUCA - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227