miRBase entry: mmu-mir-6540

Stem-loop mmu-mir-6540


Accession
MI0022356
Symbol
MGI: Mir6540
Description
Mus musculus mmu-mir-6540 precursor miRNA


Sequence

4031 reads, 48 reads per million, 54 experiments
ggaauaacugggcaaaggcucucCUAAGGCAGGCAGACUUCAGUGuugcccauuucucaguucUCUGAAGCUUGCUUACCUCCAaagggccuuugccauagcccugua
.......(((((((((((((((....(((.((((((.((((((.(..((..........)).).)))))).)))))).)))....)))))))))))).))).......

Structure
ggaauaa   -            cCUA   C      A      U uu  ccau 
       cug ggcaaaggcucu    AGG AGGCAG CUUCAG G  gc    u
       ||| ||||||||||||    ||| |||||| |||||| |  ||     
       gau ccguuuccggga    UCC UUCGUU GAAGUC c  ug    u
auguccc   a            aACC   A      C      U -u  acuc 


Annotation confidence High
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Genome context
chr16: 42303362-42303469 [-]

Database links

Mature mmu-miR-6540-5p

Accession MIMAT0025585
Description Mus musculus mmu-miR-6540-5p mature miRNA
Sequence 24 - CUAAGGCAGGCAGACUUCAGUG - 45
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature mmu-miR-6540-3p

Accession MIMAT0025586
Description Mus musculus mmu-miR-6540-3p mature miRNA
Sequence 64 - UCUGAAGCUUGCUUACCUCCA - 84
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 20605486
    Regulation of microRNA expression and abundance during lymphopoiesis
    "Kuchen S, Resch W, Yamane A, Kuo N, Li Z, Chakraborty T, Wei L, Laurence A, Yasuda T, Peng S, Hu-Li J, Lu K, Dubois W, Kitamura Y, Charles N, Sun HW, Muljo S, Schwartzberg PL, Paul WE, O'Shea J, Rajewsky K, Casellas R"
    "Immunity (2010) 32:828-839