miRBase entry: hpa-MIR156a

Stem-loop hpa-MIR156a


Accession
MI0022234
Description
Helianthus paradoxus hpa-MIR156a precursor miRNA


Sequence

augauguuugcgacggugaugaUGACAGAAGAGAGAGAGCACagucagauggcaccaccggcugcaccacccgagccgguggcggauacccgucacagaacagcuugucauaauugcugcuauuauuauuauuagccucaaaacuaagaaguugcugaugacagacuuuugguggugauguuucgugguugaguuuaaggugugaacccgaacaguuguuaugaaacaggcugaauugcugcuuuccguguacuuuuuuggugcccgaagaugauucuggauauggguucuguuuuagggcccgggucgaguauguggguucuucuucacacuugaccauucccguccauaguggguucgugagaguugguguuugguacacguguggacuugcgaauuguaacaucgugguaccuuggugaguggagaaaagcccugcagcacgugagguaucggguugaggcuuucuucuccuacgguuauguccaucaagacguuucgcagcuucguucccccggcg
((((((.......(((((((.((((((..........(((....((.((((((.(((((((((..........))))))))).).....)))))...))...))))))))).))))))).......))))))..(((..........((((((((.((.....((((((((((((..(((..((((((..(((...(((((.(.(((((((.((((((((....)))).))))......((((((.(((((...(((((((...))))))).....((.(((.(((((((((...))))))))).))).))..((((((((.((((((((...(.((((.....((((((.(((((((((((((.....((((.....)))).......))))))))))....))).)))).))..)))).))))))))).))))).)))))))).))))))))))))).).)))))...))))))))).)))..))))))))).)))))))))))))........))).

Structure
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------      uuugcga       g      GAAGAGAGAG   ACag  --a     ----- a         gcac 
                                                                                                                                                                                                                                                                                                                                                                                                    augaug       cggugau aUGACA          AGC    uc   gaugg     c ccaccggcu    c
                                                                                                                                                                                                                                                                                                                                                                                                    ||||||       ||||||| ||||||          |||    ||   |||||     | |||||||||     
                                                                                                                                                                                                                                                                                                                                                                                                    uauuau       gucguua uacugu          ucg    ag   cugcc     g gguggccga    a
gcggcccccuugcuucgacgcuuugcagaacuaccuguauuggcauccucuucuuucggaguugggcuauggagugcacgacgucccgaaaagaggugagugguuccauggugcuacaauguuaagcguucaggugugcacaugguuugugguugagagugcuugggugauaccugcccuuaccaguucacacuucuucuuggguguaugagcugggcccgggauuuugucuuggguauaggucuuaguagaagcccgugguuuuuucaugugccuuucgucguuaagucggacaaaguauuguugacaagcccaaguguggaauuugaguuggugcuuuguaguggugguuuucagacaguagucguugaagaaucaaaacuccgau      uauuauc       a      ----------   -aca  aca     cauag c         gccc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hpa-miR156a

Accession MIMAT0025494
Description Helianthus paradoxus hpa-miR156a mature miRNA
Sequence 23 - UGACAGAAGAGAGAGAGCAC - 42
Evidence not_experimental

References

  1. PubMed ID: 21670966
    Identification of MicroRNAs and their targets in Helianthus
    "Barozai MY, Baloch IA, Din M"
    "Mol Biol Rep (2012) 39:2523-2532