Stem-loop ssc-let-7d

Accession

MI0022120

Description

Sus scrofa ssc-let-7d precursor miRNA

Literature search

41 open access papers mention ssc-let-7d
(124 sentences)

Sequence

90 reads, 22 reads per million, 13 experiments

guuccuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagagauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCUuagggccuua
..((((((((.((((((((((((((.((((((...(((((((...)))))))..........)))))).)))))))))))))))))))))).....

Structure

---gu        A              C      -------uua       g 
     uccuagga GAGGUAGUAGGUUG AUAGUU          gggcaga  
     |||||||| |||||||||||||| ||||||          ||||||| a
     gggauUCU UUCCGUCGUCCAGC UAUCaa          cccguuu  
auucc        -              A      uggaggaaca       u 

Annotation confidence Not enough data

Genome context

chr3: 44867267-44867362 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-let-7d

Mature ssc-let-7d-5p

• Accession: MIMAT0025356
• Description: Sus scrofa ssc-let-7d-5p mature miRNA
• Sequence: 11 - AGAGGUAGUAGGUUGCAUAGUU - 32
• Evidence: experimental ; Illumina [1-2]

Mature ssc-let-7d-3p

• Accession: MIMAT0025357
• Description: Sus scrofa ssc-let-7d-3p mature miRNA
• Sequence: 65 - CUAUACGACCUGCUGCCUUUCU - 86
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100