Stem-loop prv-mir-LLT11a

Accession

MI0022083

Description

Pseudorabies virus prv-mir-LLT11a precursor miRNA

Sequence

gguggcagcgggggAGGCUGGGAGUGGGGACGGAAGAcggaagccagaugaaccugUUCCGCCCGCUCUCCCACCGCCUUUcccucccc
((.((....(((((((((((((((.((((.(((((.(.((............))).)))))))).).))))))..))))))))).))))

Structure

  u  cagc         --      U -   A     G c  aagcc 
gg gg    gggggAGGC  UGGGAG G GGG CGGAA A gg     a
|| ||    |||||||||  |||||| | ||| ||||| | ||      
cc cc    cccUUUCCG  ACCCUC C CCC GCCUU u cc     g
  -  ---u         CC      U G   -     g -  aagua 

Annotation confidence Not enough data

Genome context

NC_006151.1: 101960-102048 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from prv-mir-LLT11a

Mature prv-miR-LLT11a-5p

• Accession: MIMAT0025315
• Description: Pseudorabies virus prv-miR-LLT11a-5p mature miRNA
• Sequence: 15 - AGGCUGGGAGUGGGGACGGAAGA - 37
• Evidence: experimental ; Illumina [1], Ion-Torrent [2]

Mature prv-miR-LLT11a-3p

• Accession: MIMAT0037462
• Description: Pseudorabies virus prv-miR-LLT11a-3p mature miRNA
• Sequence: 57 - UUCCGCCCGCUCUCCCACCGCCUUU - 81
• Evidence: experimental ; Ion-Torrent [2]

References

1. PubMed ID: 22292087
   Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
   Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
   PLoS One (2012) 7:e30988


2. PubMed ID: 24475202
   The role of viral and host microRNAs in the Aujeszky's disease virus during the infection process
   Timoneda O, Núñez-Hernández F, Balcells I, Muñoz M, Castelló A, Vera G, Pérez LJ, Egea R, Mir G, Córdoba S, Rosell R, Segalés J, Tomàs A, Sánchez A, Núñez JI
   PLoS One (2014) 9:e86965