Stem-loop prv-mir-LLT10a

Accession

MI0022081

Description

Pseudorabies virus prv-mir-LLT10a precursor miRNA

Sequence

cggcuuccggggcgcggccggggcgggcuccgcggaucgcaucggcgcgCCGAGCCUGCCCCUUCCGUCGCAccgggggucc
.(((((((((.((((((..(((((((((((.(((...(((....)))))).)))))))))))..))).))).))))))))).

Structure

c         g   -   cc           c   gau   a 
 ggcuuccgg gcg cgg  ggggcgggcuc gcg   cgc u
 ||||||||| ||| |||  ||||||||||| |||   |||  
 cugggggcc CGC GCC  CCCCGUCCGAG Cgc   gcg c
c         A   U   UU           C   ---   g 

Annotation confidence Not enough data

Genome context

NC_006151.1: 101789-101870 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from prv-mir-LLT10a

Mature prv-miR-LLT10a

• Accession: MIMAT0025313
• Description: Pseudorabies virus prv-miR-LLT10a mature miRNA
• Sequence: 50 - CCGAGCCUGCCCCUUCCGUCGCA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22292087
   Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
   Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
   PLoS One (2012) 7:e30988