Stem-loop prv-mir-LLT5

Accession

MI0022076

Description

Pseudorabies virus prv-mir-LLT5 precursor miRNA

Sequence

ccuguuccccauccuuccacccaugcauucauccgugcggugguggggaUGAGUGGAUGGAUGGAGGCGAGggacgcggu
.((((..(((.((((((((.((((.(((((((((.(((....))).))))))))).)))).)))))).)))))..)))).

Structure

c    uc   a  -      c    g         g   g 
 cugu  ccc uc cuucca ccau cauucaucc ugc g
 ||||  ||| || |||||| |||| ||||||||| |||  
 ggcg  ggG AG GGAGGU GGUA GUGAGUagg gug u
u    ca   -  C      A    G         g   g 

Annotation confidence Not enough data

Genome context

NC_006151.1: 99861-99940 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from prv-mir-LLT5

Mature prv-miR-LLT5

• Accession: MIMAT0025308
• Description: Pseudorabies virus prv-miR-LLT5 mature miRNA
• Sequence: 50 - UGAGUGGAUGGAUGGAGGCGAG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22292087
   Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
   Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
   PLoS One (2012) 7:e30988