Stem-loop prv-mir-LLT4

Accession

MI0022075

Description

Pseudorabies virus prv-mir-LLT4 precursor miRNA

Sequence

gccgcggccaAGAGUAUCAGCGUGGCUUUUUUguuggucagggugugaaaaaggcacgcugaugcguccgccgcugcag
((.(((((...(((((((((((((.(((((((..............))))))).))))))))))).)).))))).))..

Structure

--  c     caA  -           G       guuggu 
  gc gcggc   GA GUAUCAGCGUG CUUUUUU      c
  || |||||   || ||||||||||| |||||||       
  cg cgccg   cu cguagucgcac gaaaaag      a
ga  u     --c  g           g       uguggg 

Annotation confidence Not enough data

Genome context

NC_006151.1: 98752-98830 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from prv-mir-LLT4

Mature prv-miR-LLT4

• Accession: MIMAT0025307
• Description: Pseudorabies virus prv-miR-LLT4 mature miRNA
• Sequence: 11 - AGAGUAUCAGCGUGGCUUUUUU - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22292087
   Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
   Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
   PLoS One (2012) 7:e30988