Stem-loop prv-mir-LLT3

Accession

MI0022074

Description

Pseudorabies virus prv-mir-LLT3 precursor miRNA

Sequence

ggugagaggcgagccgggggggucgagugggccucgcacuuuacgCGCACACGCCCCUCUCGCGCACcacacaccac
((((.(.((.(.((.(((((((.((.(((.((............)).))).))))))))).)).).)).).))))..

Structure

--    a a  c a  c       u  a   g  cucgc 
  ggug g gg g gc ggggggg cg gug gc     a
  |||| | || | || ||||||| || ||| ||      
  ccac c cC C CG UCUCCCC GC CAC Cg     c
ca    a a  A G  C       -  A   G  cauuu 

Annotation confidence Not enough data

Genome context

NC_006151.1: 98440-98516 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from prv-mir-LLT3

Mature prv-miR-LLT3

• Accession: MIMAT0025306
• Description: Pseudorabies virus prv-miR-LLT3 mature miRNA
• Sequence: 46 - CGCACACGCCCCUCUCGCGCAC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22292087
   Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
   Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
   PLoS One (2012) 7:e30988