Stem-loop hbr-MIR159a

Accession

MI0022053

Description

Hevea brasiliensis hbr-MIR159a precursor miRNA

Literature search

3 open access papers mention hbr-MIR159a
(19 sentences)

Sequence

uugaauacugauuuaggguuaagaaguggagcuccuugaaguccaauagagguucuugcuggguagauugagcugcugagcuauggaucccucagcccuaucccaucauaaagaguaguccucuuggauaggcuuguggcuugcauaucucaggagcuucauuaccucauauguuagauccuugUUUGGAUUGAAGGGAGCUCUAcaucuaagucuuucac
........(((...(((.(((.((.((((((((((((..(((((((..((((.(((.(((((((((...(((((.(((((.((((.(..((.(((.(((((((.......(((((.....)))))))))))).))).))..).)))).))))).)))))..))))).))...)).))).))))..)))))))..)))))))))))).))))).))).))).

Structure

uugaauac   uuu   g   a  a            ga       ua    u   u  ---  -     auu     g     c    g uc  u   c       caucaua     u 
        uga   agg uua ga guggagcuccuu  aguccaa  gagg ucu gc   ug gguag   gagcu cugag uaug a  cc cag ccuaucc       aagag a
        |||   ||| ||| || ||||||||||||  |||||||  |||| ||| ||   || |||||   ||||| ||||| |||| |  || ||| |||||||       ||||| g
        acu   ucu aau cu cAUCUCGAGGGA  UUAGGUU  uucc aga ug   ac ccauu   uucga gacuc auac u  gg guu ggauagg       uucuc u
-------c   --u   g   -  a            AG       Ug    u   u  uau  u     -ac     g     u    g uc  u   c       -------     c 

Annotation confidence Not enough data

Genome context

KB617427.1: 38053-38273 [+]

Mature hbr-miR159a

• Accession: MIMAT0025283
• Description: Hevea brasiliensis hbr-miR159a mature miRNA
• Sequence: 185 - UUUGGAUUGAAGGGAGCUCUA - 205
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22330773
   Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets
   Gébelin V, Argout X, Engchuan W, Pitollat B, Duan C, Montoro P, Leclercq J
   BMC Plant Biol (2012) 12:18