Stem-loop ptc-MIR828b

Accession

MI0022050

Description

Populus trichocarpa ptc-MIR828b precursor miRNA MIR828

Gene
family

RF01026; MIR828

Literature search

3 open access papers mention ptc-MIR828b
(9 sentences)

Sequence

110 reads, 2.0 reads per million, 8 experiments

ccucuuuguaauguuUCUUGCUCAAAUGAGUAUUCCaacaacaguagccuuuugaacaagaacauauguuuuugccuuguaugguuaugauguugcugguauuuacuguuUCUGAGAUGCUCAUUCGAGCaagaaauauuagaagagg
(((((((.(((((((((((((((.(((((((((((((.(((((((((((.......(((((((....)))))))........))))))..))))).)))................)))))))))).))))))))))))))))))))))

Structure

       g               A          ----------------   a     --      -uuuugaa       a 
ccucuuu uaauguuUCUUGCUC AAUGAGUAUU                CCa caaca  guagcc        caagaac u
||||||| ||||||||||||||| ||||||||||                ||| |||||  ||||||        |||||||  
ggagaag auuauaaagaaCGAG UUACUCGUAG                ggu guugu  uauugg        guuuuug a
       -               C          AGUCUuugucauuuau   c     ag      uauguucc       u 

Annotation confidence Not enough data

Genome context

CM000351.2: 776048-776195 [+]

Mature ptc-miR828b-5p

• Accession: MIMAT0025280
• Description: Populus trichocarpa ptc-miR828b-5p mature miRNA
• Sequence: 16 - UCUUGCUCAAAUGAGUAUUCC - 36
• Evidence: experimental ; miRNAseq [1]

Mature ptc-miR828b-3p

• Accession: MIMAT0025281
• Description: Populus trichocarpa ptc-miR828b-3p mature miRNA
• Sequence: 111 - UCUGAGAUGCUCAUUCGAGC - 130
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034