Stem-loop ptc-MIR395k

Accession

MI0022045

Description

Populus trichocarpa ptc-MIR395k precursor miRNA

Literature search

5 open access papers mention ptc-MIR395k
(7 sentences)

Sequence

140 reads, 2.0 reads per million, 9 experiments

gaaacgcaaagaacguuagcugucccccggaGUUUCCCUGACCACUUCACUggggcuauaauucuacucuucguguuuaaggguagaggcaacccuuccucaCUGAAGUGUUUGGGGGAACUCuggguggcauuuaacacuguuuagcuguc
.....(((((.(..(((((.((((.((((((((((((((((.(((((((.(((((......((((((((((.......)))))))))).........))))).))))))).)))))))))))))))).)))).)))))..).))).))....

Structure

gaaac  -   g ac     c    c                C       C     ---cuauaa          cg 
     gc aaa a  guuag uguc cccggaGUUUCCCUGA CACUUCA Ugggg         uucuacucuu  u
     || ||| |  ||||| |||| |||||||||||||||| ||||||| |||||         ||||||||||  g
     cg uuu u  caauu acgg ggguCUCAAGGGGGUU GUGAAGU acucc         gagaugggaa  u
-cugu  a   g ca     u    u                U       C     uucccaacg          uu 

Annotation confidence High

Genome context

Unknown

Mature ptc-miR395k-5p

• Accession: MIMAT0055693
• Description: Populus trichocarpa ptc-miR395k-5p mature miRNA
• Sequence: 32 - GUUUCCCUGACCACUUCACU - 51
• Evidence: experimental ; unknown

Mature ptc-miR395k-3p

• Accession: MIMAT0025273
• Description: Populus trichocarpa ptc-miR395k-3p mature miRNA
• Sequence: 103 - CUGAAGUGUUUGGGGGAACUC - 123
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034