Stem-loop ptc-MIR2111b

Accession

MI0022044

Description

Populus trichocarpa ptc-MIR2111b precursor miRNA

Gene family

MIPF0000754; MIR2111

Sequence

auauugggucaggauugggUAAUCUGCAUCCUGAGGUUUGgaucaccacauguuuugaucuaguccuuggguugcagauuaccucuuccucacugacaaugu
(((((((((.((((..((((((((((((.(((((((.((((((((..........)))))))).))))))).))))))))))))..)))).)))..))))))

Structure

      --   c    uu            U       U        ccac 
auauug  ggu agga  gggUAAUCUGCA CCUGAGG UUGgauca    a
||||||  ||| ||||  |||||||||||| ||||||| ||||||||     
uguaac  uca uccu  uccauuagacgu ggguucc gaucuagu    u
      ag   c    uc            u       u        uuug 

Annotation confidence Not enough data

Genome context

CM000342.2: 6828097-6828198 [-]

Mature ptc-miR2111b

• Accession: MIMAT0025272
• Description: Populus trichocarpa ptc-miR2111b mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUG - 40
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034