Stem-loop ptc-MIR482b

Accession

MI0022043

Description

Populus trichocarpa ptc-MIR482b precursor miRNA

Literature search

7 open access papers mention ptc-MIR482b
(133 sentences)

Sequence

gagaagagccggagggggagacugagaccuacuggaaguugugGGCAUGAGGUGUUUGGCAAGAaaauggaucuuuuccuuaugaugauuucUUACCAAUACCUCUCAUGCCAAugauuuccagcaguuccucccuuucccuucuuucuc
((((((((..((((((((((((((.......(((((((((((.(((((((((.((((((.((((((..(((.....))).........)))))).)))).)).))))))))).)))))))))))))))..)))))))))).))).)))))

Structure

     -   cc          --    agaccua           g         U  -    C      -------au   u 
gagaa gag  ggagggggag  acug       cuggaaguugu GGCAUGAGG GU UUGG AAGAaa         gga c
||||| |||  ||||||||||  ||||       ||||||||||| ||||||||| || |||| ||||||         ||| u
cucuu cuu  ccuuucccuc  ugac       gaccuuuaguA CCGUACUCU CA AACC UUcuuu         ccu u
     u   -c          cu    -------           A         C  U    A      aguaguauu   u 

Annotation confidence Not enough data

Genome context

CM000341.2: 11901546-11901695 [-]

Mature ptc-miR482b-3p

• Accession: MIMAT0025271
• Description: Populus trichocarpa ptc-miR482b-3p mature miRNA
• Sequence: 93 - UUACCAAUACCUCUCAUGCCAA - 114
• Evidence: experimental ; miRNAseq [1], Illumina [2]

Mature ptc-miR482b-5p

• Accession: MIMAT0027338
• Description: Populus trichocarpa ptc-miR482b-5p mature miRNA
• Sequence: 44 - GGCAUGAGGUGUUUGGCAAGA - 64
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233